Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10015263

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10015263
Fusion NameHBV-chr22 integration
ValidatedNo
Curated WayVISDB1.0
MethodWhole-genome sequencing
Wet AssayNo
Sample ID75
Sample Name75T
Sample TypeTumor
Age-
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID22634754
JournalNature GeNetics
Published Year2012
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr22
Cytogenetic Bandq13.1
Human Strand+
Human Integration Location TypeIntergenic
Hg19 Start37997820
Hg19 End37997820
Hg38 Start37601813
Hg38 End37601813
Junction Sequence-
Target Gene
Target Gene-
Nearby GeneENSG00000310096
Distance127
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionNC_003977
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus (strain ayw) genome
Virus Genome Length3182
Virus Breakpoint1644
Virus Breakpoint2-
Virus Gene Name-
Virus Region TypeHBVgp1 Polymerase;HBVgp2 pre-S2/S;HBVgp2
Integrated Virus SequenceGAACCTCTATGTATCCCTCCTGTTGCTGTACCAAACCTTCGGACGGAAATTGCACCTGTATTCCCATCCCATCATCCTGGGCTTTCGGAAAATTCCTATG| |GGAGTGGGCCTCAGCCCGTTTCTCCTGGCTCAGTTTACTAGTGCCATTTGTTCAGTGGTTCGTAGGGCTTTCCCCCACTGTTTGGCTTTCAGTTATATGG
ViMIC ID-