Basic Information ▼ | |
VISDB ID | TVIS10015265 |
---|---|
Fusion Name | HBV-GABRB3 integration |
Validated | No |
Curated Way | VISDB1.0 |
Method | Whole-genome sequencing |
Wet Assay | No |
Sample ID | 81 |
Sample Name | 81T |
Sample Type | Tumor |
Age | - |
Gender | - |
Disease Information ▼ | |
Disease Name | Hepatocellular carcinoma |
Disease Abbreviation | HCC |
Cancer | Yes |
Literature ▼ | |
PubMed ID | 22634754 |
Journal | Nature GeNetics |
Published Year | 2012 |
Human Genome ▼ | |
Human Genome Version Description | GRCh37/hg19 |
Human Genome RefSeq Accession | GCF_000001405.13 |
Human Chromosome | chr15 |
Cytogenetic Band | q12 |
Human Strand | + |
Human Integration Location Type | Intronic |
Hg19 Start | 27031371 |
Hg19 End | 27031371 |
Hg38 Start | 26786224 |
Hg38 End | 26786224 |
Junction Sequence | - |
Target Gene ▼ | |
Target Gene | GABRB3 |
Nearby Gene | - |
Distance | - |
Virus Information ▼ | |
Virus Name | Hepatitis B virus |
Virus Subtype Name | - |
Virus Genome Accession | NC_003977 |
TaxonomyID | 10407 |
Virus Abbreviation | HBV |
Virus Genome | Hepatitis B virus (strain ayw) genome |
Virus Genome Length | 3182 |
Virus Breakpoint1 | 543 |
Virus Breakpoint2 | - |
Virus Gene Name | - |
Virus Region Type | HBVgp1 Polymerase;HBVgp2 pre-S2/S;HBVgp2 |
Integrated Virus Sequence | TCTTCTGGACTATCAAGGTATGTTGCCCGTTTGTCCTCTAATTCCAGGATCCTCAACAACCAGCACGGGACCATGCCGGACCTGCATGACTACTGCTCAA| |GGAACCTCTATGTATCCCTCCTGTTGCTGTACCAAACCTTCGGACGGAAATTGCACCTGTATTCCCATCCCATCATCCTGGGCTTTCGGAAAATTCCTAT |
ViMIC ID | - |