Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10015287

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10015287
Fusion NameHBV-INPP4B integration
ValidatedNo
Curated WayVISDB1.0
MethodWhole-genome sequencing
Wet AssayNo
Sample ID98
Sample Name98N
Sample TypeNontumor
Age-
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID22634754
JournalNature GeNetics
Published Year2012
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr4
Cytogenetic Bandq31.21
Human Strand+
Human Integration Location TypeIntronic
Hg19 Start143117219
Hg19 End143117219
Hg38 Start142196066
Hg38 End142196066
Junction Sequence-
Target Gene
Target GeneINPP4B
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionNC_003977
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus (strain ayw) genome
Virus Genome Length3182
Virus Breakpoint11782
Virus Breakpoint2-
Virus Gene Name-
Virus Region TypeHBVgp3 X protein
Integrated Virus SequenceTGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGG| |CTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGT
ViMIC ID-