Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10015780

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10015780
Fusion NameHBV-TMEM87A integration
ValidatedNo
Curated WayVISDB1.0
MethodMassive anchored parallel sequencing
Wet AssayNo
Sample ID115
Sample NameN115
Sample TypeAdjacent tissue
Age-
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID23236287
JournalPLOS Genetics
Published Year2012
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr15
Cytogenetic Bandq15.1
Human Strand-
Human Integration Location TypeIntronic
Hg19 Start42504934
Hg19 End42504934
Hg38 Start42212736
Hg38 End42212736
Junction Sequence-
Target Gene
Target GeneVPS39-DT, TMEM87A
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionAY800389.1 ;AY800390.1;AY800391.1;AY800392.1
TaxonomyID10407
Virus AbbreviationHBV
Virus Genome-
Virus Genome Length0
Virus Breakpoint1-
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-