Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10015915

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10015915
Fusion NameHBV-FBLN5 integration
ValidatedYes
Curated WayVISDB1.0
MethodAlu PCR and sequencing
Wet AssayYes
Sample ID09H-70
Sample Name09H-70
Sample TypeTumor
Age47
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID22962577
JournalPLoS One
Published Year2012
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr14
Cytogenetic Bandq32.12
Human Strand+
Human Integration Location TypeIntron
Hg19 Start92353742
Hg19 End92353742
Hg38 Start91887398
Hg38 End91887398
Junction Sequence-
Target Gene
Target GeneFBLN5
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionNot given
TaxonomyID10407
Virus AbbreviationHBV
Virus Genome-
Virus Genome Length0
Virus Breakpoint11757
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-