Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10015982

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10015982
Fusion NameHBV-chr17:q25.3 integration
ValidatedYes
Curated WayVISDB1.0
MethodAlu PCR and sequencing
Wet AssayYes
Sample ID09HP-42
Sample Name09HP-42
Sample TypeNontumor
Age48
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID22962577
JournalPLoS One
Published Year2012
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr17
Cytogenetic Bandq25.3
Human Strand-
Human Integration Location Type-
Hg19 Start80032811
Hg19 End80032811
Hg38 Start82074935
Hg38 End82074935
Junction Sequence-
Target Gene
Target Gene-
Nearby GeneFASN
Distance3403
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionNot given
TaxonomyID10407
Virus AbbreviationHBV
Virus Genome-
Virus Genome Length0
Virus Breakpoint11807
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-