Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10016077

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10016077
Fusion NameHBV-OSBPL1A integration
ValidatedYes
Curated WayVISDB1.0
Methodligation mediated PCR
Wet AssayYes
Sample ID432
Sample Name432P
Sample TypeNontumor
Age70
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID22962577
JournalPLoS One
Published Year2012
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr18
Cytogenetic Bandq11.2
Human Strand+
Human Integration Location TypeIntron
Hg19 Start21942919
Hg19 End21942919
Hg38 Start24362955
Hg38 End24362955
Junction Sequence-
Target Gene
Target GeneOSBPL1A
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionNot given
TaxonomyID10407
Virus AbbreviationHBV
Virus Genome-
Virus Genome Length0
Virus Breakpoint11831
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-