Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10016111

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10016111
Fusion NameHBV-LGSN integration
ValidatedNo
Curated WayVISDB1.0
Methodde novo assembly of RNA-seq reads
Wet AssayNo
Sample ID31107
Sample Name31107N
Sample TypeNontumor
Age40
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID22267523
JournalGenome Research
Published Year2012
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr6
Cytogenetic Bandq12
Human Strand+
Human Integration Location TypeIntronic
Hg19 Start63986488
Hg19 End63986554
Hg38 Start63276583
Hg38 End63276649
Junction SequenceCCATAAAGAAGCTTTCCAAATAGCTTTTTTCAGCATTAGGTCTACAAAAAAAATTATTTATGTTCT
Target Gene
Target GeneLGSN
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionAY033073.1
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus serotype ayw1, complete genome
Virus Genome Length3215
Virus Breakpoint12870
Virus Breakpoint22879
Virus Gene Name-
Virus Region Type-
Integrated Virus SequenceGGGGCTCTAC
ViMIC ID-