Basic Information ▼ | |
VISDB ID | TVIS10016151 |
---|---|
Fusion Name | HBV-CTNNA2 integration |
Validated | No |
Curated Way | VISDB1.0 |
Method | de novo assembly of RNA-seq reads |
Wet Assay | No |
Sample ID | 31107 |
Sample Name | 31107T |
Sample Type | Tumor |
Age | 40 |
Gender | - |
Disease Information ▼ | |
Disease Name | Hepatocellular carcinoma |
Disease Abbreviation | HCC |
Cancer | Yes |
Literature ▼ | |
PubMed ID | 22267523 |
Journal | Genome Research |
Published Year | 2012 |
Human Genome ▼ | |
Human Genome Version Description | GRCh37/hg19 |
Human Genome RefSeq Accession | GCF_000001405.13 |
Human Chromosome | chr2 |
Cytogenetic Band | p12 |
Human Strand | + |
Human Integration Location Type | Intronic |
Hg19 Start | 80251951 |
Hg19 End | 80252049 |
Hg38 Start | 80024825 |
Hg38 End | 80024923 |
Junction Sequence | acagccttttattttacactctgtcacttggtacctgagttcttgtctggtgtccaggaagaattaggtcatgcaaatgaattgaaagatggtgtatg |
Target Gene ▼ | |
Target Gene | CTNNA2 |
Nearby Gene | - |
Distance | - |
Virus Information ▼ | |
Virus Name | Hepatitis B virus |
Virus Subtype Name | - |
Virus Genome Accession | AY033073.1 |
TaxonomyID | 10407 |
Virus Abbreviation | HBV |
Virus Genome | Hepatitis B virus serotype ayw1, complete genome |
Virus Genome Length | 3215 |
Virus Breakpoint1 | 1800 |
Virus Breakpoint2 | 1822 |
Virus Gene Name | - |
Virus Region Type | - |
Integrated Virus Sequence | CTGCATCCTGCTGCTATGCCTCA |
ViMIC ID | - |