Basic Information ▼ | |
VISDB ID | TVIS10016227 |
---|---|
Fusion Name | HBV-DCDC1 integration |
Validated | No |
Curated Way | VISDB1.0 |
Method | Whole-genome sequencing |
Wet Assay | No |
Sample ID | 31656 |
Sample Name | 31656N |
Sample Type | Nontumor |
Age | 45 |
Gender | - |
Disease Information ▼ | |
Disease Name | Hepatocellular carcinoma |
Disease Abbreviation | HCC |
Cancer | Yes |
Literature ▼ | |
PubMed ID | 22267523 |
Journal | Genome Research |
Published Year | 2012 |
Human Genome ▼ | |
Human Genome Version Description | GRCh37/hg19 |
Human Genome RefSeq Accession | GCF_000001405.13 |
Human Chromosome | chr11 |
Cytogenetic Band | p13 |
Human Strand | + |
Human Integration Location Type | Intronic |
Hg19 Start | 31358116 |
Hg19 End | 31358151 |
Hg38 Start | 31336569 |
Hg38 End | 31336604 |
Junction Sequence | ATGCATTGAAATAATTGTATTGCAATGTCCTAATG |
Target Gene ▼ | |
Target Gene | DCDC1 |
Nearby Gene | - |
Distance | - |
Virus Information ▼ | |
Virus Name | Hepatitis B virus |
Virus Subtype Name | - |
Virus Genome Accession | NC_003977 |
TaxonomyID | 10407 |
Virus Abbreviation | HBV |
Virus Genome | Hepatitis B virus (strain ayw) genome |
Virus Genome Length | 3182 |
Virus Breakpoint1 | 2304 |
Virus Breakpoint2 | 2339 |
Virus Gene Name | - |
Virus Region Type | - |
Integrated Virus Sequence | CCAAATGCCCCTATCCTATCAACACTTCCGGAGACT |
ViMIC ID | - |