Basic Information ▼ | |
VISDB ID | TVIS10016234 |
---|---|
Fusion Name | HBV-GDPD4 integration |
Validated | No |
Curated Way | VISDB1.0 |
Method | Whole-genome sequencing |
Wet Assay | No |
Sample ID | 31656 |
Sample Name | 31656N |
Sample Type | Nontumor |
Age | 45 |
Gender | - |
Disease Information ▼ | |
Disease Name | Hepatocellular carcinoma |
Disease Abbreviation | HCC |
Cancer | Yes |
Literature ▼ | |
PubMed ID | 22267523 |
Journal | Genome Research |
Published Year | 2012 |
Human Genome ▼ | |
Human Genome Version Description | GRCh37/hg19 |
Human Genome RefSeq Accession | GCF_000001405.13 |
Human Chromosome | chr11 |
Cytogenetic Band | q13.5 |
Human Strand | - |
Human Integration Location Type | Intronic |
Hg19 Start | 76946286 |
Hg19 End | 76946321 |
Hg38 Start | 77235241 |
Hg38 End | 77235276 |
Junction Sequence | aattcaatgtagtaaagatgtcagttctccctcaa |
Target Gene ▼ | |
Target Gene | GDPD4 |
Nearby Gene | - |
Distance | - |
Virus Information ▼ | |
Virus Name | Hepatitis B virus |
Virus Subtype Name | - |
Virus Genome Accession | NC_003977 |
TaxonomyID | 10407 |
Virus Abbreviation | HBV |
Virus Genome | Hepatitis B virus (strain ayw) genome |
Virus Genome Length | 3182 |
Virus Breakpoint1 | 1761 |
Virus Breakpoint2 | 1796 |
Virus Gene Name | - |
Virus Region Type | - |
Integrated Virus Sequence | AAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATT |
ViMIC ID | - |