Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10016238

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10016238
Fusion NameHBV-chr11 integration
ValidatedNo
Curated WayVISDB1.0
MethodWhole-genome sequencing
Wet AssayNo
Sample ID31656
Sample Name31656N
Sample TypeNontumor
Age45
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID22267523
JournalGenome Research
Published Year2012
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr11
Cytogenetic Bandq25
Human Strand-
Human Integration Location Type-
Hg19 Start134428455
Hg19 End134428535
Hg38 Start134558561
Hg38 End134558641
Junction Sequenceaagctgttgcctggaatgtggggtcagatgttcccgccatagatagatggggagaccagatgcctttcctccccatcctg
Target Gene
Target Gene-
Nearby GeneENSG00000254573
Distance4747
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionNC_003977
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus (strain ayw) genome
Virus Genome Length3182
Virus Breakpoint11605
Virus Breakpoint21786
Virus Gene Name-
Virus Region Type-
Integrated Virus SequenceTCGCATGGAGACCACCGTGAACGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTA
ViMIC ID-