Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10016299

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10016299
Fusion NameHBV-FN1 integration
ValidatedNo
Curated WayVISDB1.0
Methodde novo assembly of RNA-seq reads
Wet AssayNo
Sample ID31656
Sample Name31656N
Sample TypeNontumor
Age45
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID22267523
JournalGenome Research
Published Year2012
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr2
Cytogenetic Bandq35
Human Strand-
Human Integration Location TypeIntronic
Hg19 Start216274400
Hg19 End216274461
Hg38 Start215409677
Hg38 End215409738
Junction SequenceCACAGATTCAGAAGTGGCCACAAGAGGAGAAAAGGGAGTCGTCTCTCCTGTCACGGTGTTG
Target Gene
Target GeneFN1
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionNC_003977
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus (strain ayw) genome
Virus Genome Length3182
Virus Breakpoint1437
Virus Breakpoint2459
Virus Gene Name-
Virus Region Type-
Integrated Virus SequenceGTTGGTTCTTCTGGACTATCAAG
ViMIC ID-
Predicted VIS Effect
Gene IdENSG00000115414.22
Gene NameFN1
TranscriptTranscript 1: ENST00000421182.5, Transcript 2: ENST00000865084.1, Transcript 3: ENST00000323926.10, Transcript 4: ENST00000336916.8, Transcript 5: ENST00000357867.8, Transcript 6: ENST00000359671.5, Transcript 7: ENST00000446046.5, Transcript 8: ENST00000865085.1, Transcript 9: ENST00000865086.1, Transcript 10: ENST00000865087.1, Transcript 11: ENST00000933287.1, Transcript 12: ENST00000443816.5, Transcript 13: ENST00000432072.6, Transcript 14: ENST00000354785.11, Transcript 15: ENST00000865088.1, Transcript 16: ENST00000865089.1, Transcript 17: ENST00000967217.1, Transcript 18: ENST00000967219.1, Transcript 19: ENST00000356005.8, Transcript 20: ENST00000967218.1, Transcript 21: ENST00000471193.1
Transcript 1 RegionCDS
Transcript 1 Impactstop_gained
Transcript 1 FrameshiftTrue
Transcript 1 Stop GainedTrue
Transcript 1 Protein Change From Aa052
Transcript 2 RegionCDS
Transcript 2 Impactstop_gained
Transcript 2 FrameshiftTrue
Transcript 2 Stop GainedTrue
Transcript 2 Protein Change From Aa052
Transcript 3 RegionCDS
Transcript 3 Impactstop_gained
Transcript 3 FrameshiftTrue
Transcript 3 Stop GainedTrue
Transcript 3 Protein Change From Aa052
Transcript 4 RegionCDS
Transcript 4 Impactstop_gained
Transcript 4 FrameshiftTrue
Transcript 4 Stop GainedTrue
Transcript 4 Protein Change From Aa052
Transcript 5 RegionCDS
Transcript 5 Impactstop_gained
Transcript 5 FrameshiftTrue
Transcript 5 Stop GainedTrue
Transcript 5 Protein Change From Aa052
Transcript 6 RegionCDS
Transcript 6 Impactstop_gained
Transcript 6 FrameshiftTrue
Transcript 6 Stop GainedTrue
Transcript 6 Protein Change From Aa052
Transcript 7 RegionCDS
Transcript 7 Impactstop_gained
Transcript 7 FrameshiftTrue
Transcript 7 Stop GainedTrue
Transcript 7 Protein Change From Aa052
Transcript 8 RegionCDS
Transcript 8 Impactstop_gained
Transcript 8 FrameshiftTrue
Transcript 8 Stop GainedTrue
Transcript 8 Protein Change From Aa052
Transcript 9 RegionCDS
Transcript 9 Impactstop_gained
Transcript 9 FrameshiftTrue
Transcript 9 Stop GainedTrue
Transcript 9 Protein Change From Aa052
Transcript 10 RegionCDS
Transcript 10 Impactstop_gained
Transcript 10 FrameshiftTrue
Transcript 10 Stop GainedTrue
Transcript 10 Protein Change From Aa052
Transcript 11 RegionCDS
Transcript 11 Impactstop_gained
Transcript 11 FrameshiftTrue
Transcript 11 Stop GainedTrue
Transcript 11 Protein Change From Aa052
Transcript 12 RegionCDS
Transcript 12 Impactstop_gained
Transcript 12 FrameshiftTrue
Transcript 12 Stop GainedTrue
Transcript 12 Protein Change From Aa052
Transcript 13 RegionCDS
Transcript 13 Impactstop_gained
Transcript 13 FrameshiftTrue
Transcript 13 Stop GainedTrue
Transcript 13 Protein Change From Aa052
Transcript 14 RegionCDS
Transcript 14 Impactstop_gained
Transcript 14 FrameshiftTrue
Transcript 14 Stop GainedTrue
Transcript 14 Protein Change From Aa052
Transcript 15 RegionCDS
Transcript 15 Impactstop_gained
Transcript 15 FrameshiftTrue
Transcript 15 Stop GainedTrue
Transcript 15 Protein Change From Aa052
Transcript 16 RegionCDS
Transcript 16 Impactstop_gained
Transcript 16 FrameshiftTrue
Transcript 16 Stop GainedTrue
Transcript 16 Protein Change From Aa052
Transcript 17 RegionCDS
Transcript 17 Impactstop_gained
Transcript 17 FrameshiftTrue
Transcript 17 Stop GainedTrue
Transcript 17 Protein Change From Aa052
Transcript 18 RegionCDS
Transcript 18 Impactstop_gained
Transcript 18 FrameshiftTrue
Transcript 18 Stop GainedTrue
Transcript 18 Protein Change From Aa052
Transcript 19 RegionCDS
Transcript 19 Impactstop_gained
Transcript 19 FrameshiftTrue
Transcript 19 Stop GainedTrue
Transcript 19 Protein Change From Aa052
Transcript 20 RegionCDS
Transcript 20 Impactstop_gained
Transcript 20 FrameshiftTrue
Transcript 20 Stop GainedTrue
Transcript 20 Protein Change From Aa052
Transcript 21 Regionexon_non_coding
Transcript 21 Impactnoncoding_exon_insertion
SpliceAI Score
Delta ScoresAcceptor Gain: 0.010 | Acceptor Loss: 0.010 | Donor Gain: 0.040 | Donor Loss: 0.000
Delta Score Max0.040
Delta Position at Max-427
Delta Score FlagLOW
GeneFN1
Altered Protein (FASTA)
AlphaGenome Analysis
Windowchr2:215344141-215475213
RNA-seq Change (±2kb)Mean: 0.25355780124664307 | Peak: 231.961181640625
ATAC Change (±2kb)Mean: -0.00055744155542925 | Peak: 15.996139526367188
InterpretationRNA-seq: INCREASED 10.6% (REF=2.39, ALT=2.64) | Splice sites: no signal in region (REF≈0, ALT≈0) | ATAC: minimal change -1.0%
Visualization