Basic Information ▼ | |
VISDB ID | TVIS10016318 |
---|---|
Fusion Name | HBV-chr3 integration |
Validated | No |
Curated Way | VISDB1.0 |
Method | Whole-genome sequencing |
Wet Assay | No |
Sample ID | 31656 |
Sample Name | 31656N |
Sample Type | Nontumor |
Age | 45 |
Gender | - |
Disease Information ▼ | |
Disease Name | Hepatocellular carcinoma |
Disease Abbreviation | HCC |
Cancer | Yes |
Literature ▼ | |
PubMed ID | 22267523 |
Journal | Genome Research |
Published Year | 2012 |
Human Genome ▼ | |
Human Genome Version Description | GRCh37/hg19 |
Human Genome RefSeq Accession | GCF_000001405.13 |
Human Chromosome | chr3 |
Cytogenetic Band | q26.1 |
Human Strand | - |
Human Integration Location Type | - |
Hg19 Start | 167139470 |
Hg19 End | 167139700 |
Hg38 Start | 167421682 |
Hg38 End | 167421912 |
Junction Sequence | cagtctCTGGCTGGAtactgggtcagtattcacatggtgtgtttccaaattatcacaggcaaaaattttaccagatagctccacaactaaataagatttcctgccttctaacctgctatttctttgtttttgttcttgttatggctctccaacttcaaattatgccacatattttgcattgtgtatagaagcccctattgaaaataccaaATTACCATCCACTACTGTCA |
Target Gene ▼ | |
Target Gene | - |
Nearby Gene | - |
Distance | - |
Virus Information ▼ | |
Virus Name | Hepatitis B virus |
Virus Subtype Name | - |
Virus Genome Accession | NC_003977 |
TaxonomyID | 10407 |
Virus Abbreviation | HBV |
Virus Genome | Hepatitis B virus (strain ayw) genome |
Virus Genome Length | 3182 |
Virus Breakpoint1 | 481 |
Virus Breakpoint2 | 557 |
Virus Gene Name | - |
Virus Region Type | - |
Integrated Virus Sequence | TAATTCCAGGATCCTCAACAACCAGCACGGGACCATGCCGGACCTGCATGACTACTGCTCAAGGAACCTCTATGTAT |
ViMIC ID | - |