Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10016318

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10016318
Fusion NameHBV-chr3 integration
ValidatedNo
Curated WayVISDB1.0
MethodWhole-genome sequencing
Wet AssayNo
Sample ID31656
Sample Name31656N
Sample TypeNontumor
Age45
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID22267523
JournalGenome Research
Published Year2012
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr3
Cytogenetic Bandq26.1
Human Strand-
Human Integration Location Type-
Hg19 Start167139470
Hg19 End167139700
Hg38 Start167421682
Hg38 End167421912
Junction SequencecagtctCTGGCTGGAtactgggtcagtattcacatggtgtgtttccaaattatcacaggcaaaaattttaccagatagctccacaactaaataagatttcctgccttctaacctgctatttctttgtttttgttcttgttatggctctccaacttcaaattatgccacatattttgcattgtgtatagaagcccctattgaaaataccaaATTACCATCCACTACTGTCA
Target Gene
Target Gene-
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionNC_003977
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus (strain ayw) genome
Virus Genome Length3182
Virus Breakpoint1481
Virus Breakpoint2557
Virus Gene Name-
Virus Region Type-
Integrated Virus SequenceTAATTCCAGGATCCTCAACAACCAGCACGGGACCATGCCGGACCTGCATGACTACTGCTCAAGGAACCTCTATGTAT
ViMIC ID-