Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10016395

Basic Information ▶
VISDB ID	TVIS10016395
Fusion Name	HBV-chr1 integration
Validated	No
Curated Way	VISDB1.0
Method	Whole-genome sequencing
Wet Assay	No
Sample ID	31656
Sample Name	31656T
Sample Type	Tumor
Age	45
Gender	-
Disease Information ▶
Disease Name	Hepatocellular carcinoma
Disease Abbreviation	HCC
Cancer	Yes
Literature ▶
PubMed ID	22267523
Journal	Genome Research
Published Year	2012
Human Genome ▶
Human Genome Version Description	GRCh37/hg19
Human Genome RefSeq Accession	GCF_000001405.13
Human Chromosome	chr1
Cytogenetic Band	p31.1
Human Strand	-
Human Integration Location Type	-
Hg19 Start	79188295
Hg19 End	79188330
Hg38 Start	78722610
Hg38 End	78722645
Junction Sequence	TAAAAAATGCCAGATGCTTGGAAGTAAAAGAGAGA
Target Gene ▶
Target Gene	-
Nearby Gene	-
Distance	-
Virus Information ▶
Virus Name	Hepatitis B virus
Virus Subtype Name	-
Virus Genome Accession	NC_003977
TaxonomyID	10407
Virus Abbreviation	HBV
Virus Genome	Hepatitis B virus (strain ayw) genome
Virus Genome Length	3182
Virus Breakpoint1	3198
Virus Breakpoint2	3233
Virus Gene Name	-
Virus Region Type	-
Integrated Virus Sequence	-
ViMIC ID	-
Predicted VIS Effect ▶
Region	intergenic
Impact	NA

AlphaGenome Analysis
Window	chr1:78657074-78788146
RNA-seq Change (±2kb)	Mean: 2.2543117665918544e-05 \| Peak: 0.003173828125
ATAC Change (±2kb)	Mean: -0.0007473803707398474 \| Peak: 8.912109375
Interpretation	RNA-seq: no signal in region (REF≈0, ALT≈0) \| Splice sites: no signal in region (REF≈0, ALT≈0) \| ATAC: minimal change -2.1%
Visualization