Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10016403

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10016403
Fusion NameHBV-chr1 integration
ValidatedNo
Curated WayVISDB1.0
MethodWhole-genome sequencing
Wet AssayNo
Sample ID31656
Sample Name31656T
Sample TypeTumor
Age45
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID22267523
JournalGenome Research
Published Year2012
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr1
Cytogenetic Bandq41
Human Strand-
Human Integration Location TypeIntronic
Hg19 Start219607157
Hg19 End219607192
Hg38 Start219433815
Hg38 End219433850
Junction Sequencettagttcaactggtttttgttatctggaattgaac
Target Gene
Target GeneENSG00000305547, LYPLAL1-AS1
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionNC_003977
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus (strain ayw) genome
Virus Genome Length3182
Virus Breakpoint1195
Virus Breakpoint2230
Virus Gene Name-
Virus Region Type-
Integrated Virus SequenceGTGTTACAGGCGGGGTTTTTCTTGTTGACAAGAATC
ViMIC ID-