Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10016448

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10016448
Fusion NameHBV-NFAT5 integration
ValidatedNo
Curated WayVISDB1.0
MethodWhole-genome sequencing
Wet AssayNo
Sample ID31656
Sample Name31656T
Sample TypeTumor
Age45
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID22267523
JournalGenome Research
Published Year2012
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr16
Cytogenetic Bandq22.1
Human Strand-
Human Integration Location TypeIntronic
Hg19 Start69690152
Hg19 End69690187
Hg38 Start69656249
Hg38 End69656284
Junction Sequencecaagctgggcaacaaagcgagactctgtctcacaa
Target Gene
Target GeneNFAT5
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionNC_003977
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus (strain ayw) genome
Virus Genome Length3182
Virus Breakpoint11373
Virus Breakpoint21408
Virus Gene Name-
Virus Region Type-
Integrated Virus SequenceCCATGGCTGCTAGGCTGTGCTGCCAACTGGATCCTG
ViMIC ID-