| Basic Information ▶ | |
| VISDB ID | TVIS10016521 |
|---|---|
| Fusion Name | HBV-chr8 integration |
| Validated | No |
| Curated Way | VISDB1.0 |
| Method | Whole-genome sequencing |
| Wet Assay | No |
| Sample ID | 31656 |
| Sample Name | 31656T |
| Sample Type | Tumor |
| Age | 45 |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | Hepatocellular carcinoma |
| Disease Abbreviation | HCC |
| Cancer | Yes |
| Literature ▶ | |
| PubMed ID | 22267523 |
| Journal | Genome Research |
| Published Year | 2012 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh37/hg19 |
| Human Genome RefSeq Accession | GCF_000001405.13 |
| Human Chromosome | chr8 |
| Cytogenetic Band | q24.21 |
| Human Strand | + |
| Human Integration Location Type | - |
| Hg19 Start | 129415529 |
| Hg19 End | 129415564 |
| Hg38 Start | 128403283 |
| Hg38 End | 128403318 |
| Junction Sequence | caacatggaaagagcttagagcagtgactggtgta |
| Target Gene ▶ | |
| Target Gene | - |
| Nearby Gene | LINC00824 |
| Distance | 1952 |
| Virus Information ▶ | |
| Virus Name | Hepatitis B virus |
| Virus Subtype Name | - |
| Virus Genome Accession | NC_003977 |
| TaxonomyID | 10407 |
| Virus Abbreviation | HBV |
| Virus Genome | Hepatitis B virus (strain ayw) genome |
| Virus Genome Length | 3182 |
| Virus Breakpoint1 | 755 |
| Virus Breakpoint2 | 790 |
| Virus Gene Name | - |
| Virus Region Type | - |
| Integrated Virus Sequence | TTGGGGGCCAAGTCTGTACAGCATCTTGAGTCCCTT |
| ViMIC ID | - |
| Predicted VIS Effect ▶ | |
| Region | intergenic |
| Impact | NA |
| AlphaGenome Analysis | |
| Window | chr8:128337747-128468819 |
| RNA-seq Change (±2kb) | Mean: 9.195377970172558e-06 | Peak: 0.006110191345214844 |
| ATAC Change (±2kb) | Mean: 0.0005433104815892875 | Peak: 1.8406982421875 |
| Interpretation | RNA-seq: no signal in region (REF≈0, ALT≈0) | Splice sites: no signal in region (REF≈0, ALT≈0) | ATAC: minimal change 2.5% |
| Visualization | |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D