Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10016533

Basic Information ▶
VISDB ID	TVIS10016533
Fusion Name	HBV-chrX integration
Validated	No
Curated Way	VISDB1.0
Method	Whole-genome sequencing
Wet Assay	No
Sample ID	31656
Sample Name	31656T
Sample Type	Tumor
Age	45
Gender	-
Disease Information ▶
Disease Name	Hepatocellular carcinoma
Disease Abbreviation	HCC
Cancer	Yes
Literature ▶
PubMed ID	22267523
Journal	Genome Research
Published Year	2012
Human Genome ▶
Human Genome Version Description	GRCh37/hg19
Human Genome RefSeq Accession	GCF_000001405.13
Human Chromosome	chrX
Cytogenetic Band	q25
Human Strand	-
Human Integration Location Type	-
Hg19 Start	125663323
Hg19 End	125663358
Hg38 Start	126529340
Hg38 End	126529375
Junction Sequence	TTATAGTAAATGGCTCTTTCATATTTTAATTATGT
Target Gene ▶
Target Gene	-
Nearby Gene	-
Distance	-
Virus Information ▶
Virus Name	Hepatitis B virus
Virus Subtype Name	-
Virus Genome Accession	NC_003977
TaxonomyID	10407
Virus Abbreviation	HBV
Virus Genome	Hepatitis B virus (strain ayw) genome
Virus Genome Length	3182
Virus Breakpoint1	3104
Virus Breakpoint2	3139
Virus Gene Name	-
Virus Region Type	-
Integrated Virus Sequence	ACCAATCGCCAGTCAGGAAGGCAGCCTACCCCGCTG
ViMIC ID	-
Predicted VIS Effect ▶
Region	intergenic
Impact	NA

AlphaGenome Analysis
Window	chrX:126463804-126594876
RNA-seq Change (±2kb)	Mean: 2.781673174467869e-05 \| Peak: 0.003143310546875
ATAC Change (±2kb)	Mean: 6.127649976406246e-05 \| Peak: 0.995086669921875
Interpretation	RNA-seq: no signal in region (REF≈0, ALT≈0) \| Splice sites: no signal in region (REF≈0, ALT≈0) \| ATAC: minimal change 0.4%
Visualization