Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10016577

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10016577
Fusion NameHBV-chr17 integration
ValidatedNo
Curated WayVISDB1.0
MethodWhole-genome sequencing
Wet AssayNo
Sample IDH442
Sample NameH442T
Sample TypeTumor
Age43
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID22267523
JournalGenome Research
Published Year2012
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr17
Cytogenetic Bandp13.3
Human Strand+
Human Integration Location Type-
Hg19 Start2309247
Hg19 End2309247
Hg38 Start2405953
Hg38 End2405953
Junction Sequence-
Target Gene
Target GeneENSG00000308797, METTL16
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionV01460.1
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus (strain ayw) genome
Virus Genome Length3182
Virus Breakpoint1973
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus SequenceGGCATTTGGTGGTCTATAAGCTGGAGGAGTGCGAATCCACACTCCGAAAGACACCAAATACTCTATAACTGTTTCTCTTCCAAAAGTGAGACAAGAAATG| |TGAAACCACAAGAGTTGCCTGAACTTTAGGCCCATATTAGTGTTGACATAACTGACTACTAGGTCTCTAGACGCTGGATCTTCCAAATTAACACCCACCC
ViMIC ID-