Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10016651

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10016651
Fusion NameHBV-chrx integration
ValidatedYes
Curated WayVISDB1.0
MethodInverse nested PCR (invPCR)
Wet AssayYes
Sample IDP3
Sample NameP3
Sample TypeNontumor
Age-
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID20519397
JournalJOURNAL OF VIROLOGY
Published Year2010
Human Genome
Human Genome Version DescriptionFeb_2009_build
Human Genome RefSeq Accession
Human Chromosomechrx
Cytogenetic Band-
Human Strand-
Human Integration Location Typeintergene
Hg19 Start84733301
Hg19 End-
Hg38 Start-
Hg38 End-
Junction Sequence-
Target Gene
Target Gene-
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionV01460.1
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus (strain ayw) genome
Virus Genome Length3182
Virus Breakpoint1-
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-