Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10016703

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10016703
Fusion NameHBV-NTRK3 integration
ValidatedYes
Curated WayVISDB1.0
MethodAlu PCR and sequencing
Wet AssayYes
Sample IDNW_001838222
Sample NameNW_001838222
Sample TypeTumor
Age-
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID23842217
JournalJ Clin Gastroenterol
Published Year2015
Human Genome
Human Genome Version DescriptionUnknown
Human Genome RefSeq Accession
Human Chromosomechr15
Cytogenetic Bandq25
Human Strand
Human Integration Location Typeintron
Hg19 Start3720206
Hg19 End-
Hg38 Start-
Hg38 End-
Junction Sequence-
Target Gene
Target Gene-
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionNot given
TaxonomyID10407
Virus AbbreviationHBV
Virus Genome-
Virus Genome Length0
Virus Breakpoint11712
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-