| Basic Information ▶ | |
| VISDB ID | TVIS10017112 |
|---|---|
| Fusion Name | HBV-STAG1 integration |
| Validated | No |
| Curated Way | VISDB1.0 |
| Method | Capture based next-generation sequencing |
| Wet Assay | No |
| Sample ID | M34 |
| Sample Name | M34 |
| Sample Type | Tumor |
| Age | - |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | Hepatocellular carcinoma |
| Disease Abbreviation | HCC |
| Cancer | Yes |
| Literature ▶ | |
| PubMed ID | 30070724 |
| Journal | Hepatology |
| Published Year | 2019 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh37/hg19 |
| Human Genome RefSeq Accession | GCF_000001405.13 |
| Human Chromosome | chr3 |
| Cytogenetic Band | q22.3 |
| Human Strand | |
| Human Integration Location Type | Intron |
| Hg19 Start | 136116904 |
| Hg19 End | 136116978 |
| Hg38 Start | 136398062 |
| Hg38 End | 136398136 |
| Junction Sequence | cagcctcctcagtagctgggattacaggcacccaacaccacacccggctaatttttgtatttttttttttttca |
| Target Gene ▶ | |
| Target Gene | STAG1 |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Hepatitis B virus |
| Virus Subtype Name | B |
| Virus Genome Accession | NC_003977 |
| TaxonomyID | 10407 |
| Virus Abbreviation | HBV |
| Virus Genome | Hepatitis B virus (strain ayw) genome |
| Virus Genome Length | 3182 |
| Virus Breakpoint1 | 1053 |
| Virus Breakpoint2 | 1130 |
| Virus Gene Name | - |
| Virus Region Type | - |
| Integrated Virus Sequence | TGATGCCTTTGTATGCATGTATTCAATCTAAGCAGGCTTTCACTTTCTCGCCAACTTACAAGGCCTTTCTGTGTAAAC |
| ViMIC ID | - |
| Predicted VIS Effect ▶ | |
| Gene Id | ENSG00000118007.14 |
| Gene Name | STAG1 |
| Region | intron |
| Impact | intronic_insertion |
| Transcript | Transcript 1: ENST00000968454.1, Transcript 2: ENST00000968453.1, Transcript 3: ENST00000862967.1, Transcript 4: ENST00000383202.7, Transcript 5: ENST00000236698.9, Transcript 6: ENST00000862965.1, Transcript 7: ENST00000862966.1, Transcript 8: ENST00000862968.1, Transcript 9: ENST00000968452.1, Transcript 10: ENST00000862964.1, Transcript 11: ENST00000434713.6, Transcript 12: ENST00000483235.5, Transcript 13: ENST00000862969.1, Transcript 14: ENST00000968456.1, Transcript 15: ENST00000968455.1, Transcript 16: ENST00000629124.2 |
| SpliceAI Score | |
| Delta Scores | Acceptor Gain: 0.000 | Acceptor Loss: 0.000 | Donor Gain: 0.000 | Donor Loss: 0.000 |
| Delta Score Max | 0.000 |
| Delta Position at Max | 0 |
| Delta Score Flag | LOW |
| Gene | STAG1 |
| AlphaGenome Analysis | |
| Chromosome | chr3 |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D