Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10017248

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10017248
Fusion NameHBV-LOC105379376 integration
ValidatedNo
Curated WayVISDB1.0
MethodCapture based next-generation sequencing
Wet AssayNo
Sample IDF2
Sample NameF2
Sample TypeTumor
Age-
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID30070724
JournalHepatology
Published Year2019
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr8
Cytogenetic Bandp11.23
Human Strand
Human Integration Location TypeIntronic
Hg19 Start36838914
Hg19 End36839016
Hg38 Start36981396
Hg38 End36981498
Junction SequenceAATGCGTATGTGTTGTGTAGGGGAACTATTCTTTAGGGGGAAAACCCAGTAATTGGCAGTATGCTATTATTATAATTAAAAGCCTCGTTAACTGGAACAAAG
Target Gene
Target GeneENSG00000306383, ENSG00000306370
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype NameC
Virus Genome AccessionNC_003977
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus (strain ayw) genome
Virus Genome Length3182
Virus Breakpoint12276
Virus Breakpoint22369
Virus Gene Name-
Virus Region Type-
Integrated Virus SequenceGATTCGCACTCCTCCAGCTTATAGACCACCAAATGCCCCTATCCTATCAACACTTCCGGAGACTACTGTTGTTAGACGACGAGGCAGGTCCCCT
ViMIC ID-