Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10017291

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10017291
Fusion NameHBV-chrX integration
ValidatedNo
Curated WayVISDB1.0
MethodCapture based next-generation sequencing
Wet AssayNo
Sample IDF9
Sample NameF9
Sample TypeTumor
Age-
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID30070724
JournalHepatology
Published Year2019
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human ChromosomechrX
Cytogenetic Bandq27.3
Human Strand
Human Integration Location TypeIntergenic
Hg19 Start146427592
Hg19 End146427660
Hg38 Start147346074
Hg38 End147346142
Junction SequencetcaaaaaaTAATAATAATaataaataaataaataaataaataaataaaaataaataaGGATAAAAATT
Target Gene
Target GeneENSG00000287017
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype NameB
Virus Genome AccessionNC_003977
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus (strain ayw) genome
Virus Genome Length3182
Virus Breakpoint11399
Virus Breakpoint21487
Virus Gene Name-
Virus Region Type-
Integrated Virus SequenceCTGGATCCTGCGCGGGACGTCCTTTGTTTACGTCCCGTCGGCGCTGAATCCTGCGGACGACCCTTCTCGGGGTCGCTTGGGACTCTCTC
ViMIC ID-