Basic Information ▼ | |
VISDB ID | TVIS10017291 |
---|---|
Fusion Name | HBV-chrX integration |
Validated | No |
Curated Way | VISDB1.0 |
Method | Capture based next-generation sequencing |
Wet Assay | No |
Sample ID | F9 |
Sample Name | F9 |
Sample Type | Tumor |
Age | - |
Gender | - |
Disease Information ▼ | |
Disease Name | Hepatocellular carcinoma |
Disease Abbreviation | HCC |
Cancer | Yes |
Literature ▼ | |
PubMed ID | 30070724 |
Journal | Hepatology |
Published Year | 2019 |
Human Genome ▼ | |
Human Genome Version Description | GRCh37/hg19 |
Human Genome RefSeq Accession | GCF_000001405.13 |
Human Chromosome | chrX |
Cytogenetic Band | q27.3 |
Human Strand | |
Human Integration Location Type | Intergenic |
Hg19 Start | 146427592 |
Hg19 End | 146427660 |
Hg38 Start | 147346074 |
Hg38 End | 147346142 |
Junction Sequence | tcaaaaaaTAATAATAATaataaataaataaataaataaataaataaaaataaataaGGATAAAAATT |
Target Gene ▼ | |
Target Gene | ENSG00000287017 |
Nearby Gene | - |
Distance | - |
Virus Information ▼ | |
Virus Name | Hepatitis B virus |
Virus Subtype Name | B |
Virus Genome Accession | NC_003977 |
TaxonomyID | 10407 |
Virus Abbreviation | HBV |
Virus Genome | Hepatitis B virus (strain ayw) genome |
Virus Genome Length | 3182 |
Virus Breakpoint1 | 1399 |
Virus Breakpoint2 | 1487 |
Virus Gene Name | - |
Virus Region Type | - |
Integrated Virus Sequence | CTGGATCCTGCGCGGGACGTCCTTTGTTTACGTCCCGTCGGCGCTGAATCCTGCGGACGACCCTTCTCGGGGTCGCTTGGGACTCTCTC |
ViMIC ID | - |