Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10017311

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10017311
Fusion NameHBV-ADCY1 integration
ValidatedNo
Curated WayVISDB1.0
MethodCapture based next-generation sequencing
Wet AssayNo
Sample IDF12
Sample NameF12
Sample TypeTumor
Age-
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID30070724
JournalHepatology
Published Year2019
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr7
Cytogenetic Bandp12.3
Human Strand
Human Integration Location TypeIntron
Hg19 Start45668032
Hg19 End45668135
Hg38 Start45628433
Hg38 End45628536
Junction SequenceTCACACAGCAGGGAAAGTGTTTCCCTGTCCTGGGATCCTTGCAGAGTGACCTGCCCAGACTCTATCAGGGGTGGAGGGTGAGCGGTTTCTGGAGGAAGGGGAA
Target Gene
Target GeneADCY1
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype NameC
Virus Genome AccessionNC_003977
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus (strain ayw) genome
Virus Genome Length3182
Virus Breakpoint11712
Virus Breakpoint21806
Virus Gene Name-
Virus Region Type-
Integrated Virus SequenceAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCA
ViMIC ID-