Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10017324

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10017324
Fusion NameHBV-chr1 integration
ValidatedNo
Curated WayVISDB1.0
MethodCapture based next-generation sequencing
Wet AssayNo
Sample IDF15
Sample NameF15
Sample TypeTumor
Age-
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID30070724
JournalHepatology
Published Year2019
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr1
Cytogenetic Bandp36.12
Human Strand
Human Integration Location TypeIntergenic
Hg19 Start20433478
Hg19 End20433578
Hg38 Start20106985
Hg38 End20107085
Junction SequenceACCAagtcttgctctgttactcaggctggagtgcgatcttggctcactgcaacctttgcctccctggttcaagcaattctcctgtctcagcctcccaagt
Target Gene
Target Gene-
Nearby GenePLA2G2D
Distance4855
Virus Information
Virus NameHepatitis B virus
Virus Subtype NameB
Virus Genome AccessionNC_003977
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus (strain ayw) genome
Virus Genome Length3182
Virus Breakpoint11
Virus Breakpoint276
Virus Gene Name-
Virus Region Type-
Integrated Virus SequenceATTCCACAACCTTCCACCAAACTCTGCAAGATCCCAGAGTGAGAGGCCTGTATTTCCCTGCTGGTGGCTCCAGTTC
ViMIC ID-