Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10017496

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10017496
Fusion NameHBV-MORF4L2 integration
ValidatedNo
Curated WayVISDB1.0
MethodTranscriptome Sequencing
Wet AssayNo
Sample ID383
Sample Name383NT
Sample TypeNontumor
Age-
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID26867494
JournalJournal of Hepatology
Published Year2016
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human ChromosomechrX
Cytogenetic Bandq22.2
Human Strand
Human Integration Location Type3UTR
Hg19 Start102930563
Hg19 End102930563
Hg38 Start103675635
Hg38 End103675635
Junction Sequence-
Target Gene
Target GeneMORF4L2
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype NameC
Virus Genome AccessionDQ089769.1
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus isolate HK430, complete genome
Virus Genome Length3215
Virus Breakpoint11308
Virus Breakpoint2-
Virus Gene Name-
Virus Region TypePolymerase;
Integrated Virus SequenceGGGCTTGGCCATAGGCCATCAGCGCATGCGTGGAACCTTTGTGGCTCCTCTGCCGATCCATACTGCGGAACTCCTAGCAGCTTGTTTTGCTCGCAGCCGG| |TCTGGGGCGAAACTGCTCGGCACCGACAACTCTGTTGTCCTCTCTCGGAAATACACCTCCTTTCCATGGCTGCTAGGCTGTGCTGCCAACTGGATCCTGC
ViMIC ID-