Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10017587

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10017587
Fusion NameHBV-MLLT6 integration
ValidatedNo
Curated WayVISDB1.0
MethodTranscriptome Sequencing
Wet AssayNo
Sample ID234
Sample Name234T
Sample TypeTumor
Age-
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID26867494
JournalJournal of Hepatology
Published Year2016
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr17
Cytogenetic Bandq12
Human Strand
Human Integration Location TypeExonic
Hg19 Start36872024
Hg19 End36872024
Hg38 Start38715771
Hg38 End38715771
Junction Sequence-
Target Gene
Target GeneMLLT6, ENSG00000275665
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype NameC
Virus Genome AccessionDQ089769.1
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus isolate HK430, complete genome
Virus Genome Length3215
Virus Breakpoint11516
Virus Breakpoint2-
Virus Gene Name-
Virus Region TypeX protein;Polymerase;
Integrated Virus SequenceTCCTTTGTCTACGTCCCGTCGGCGCTGAATCCCGCGGACGACCCGTCTCGGGGCCGTTTGGGACTCTACCGTCCCCTTCTTCGTCTGCCGTTCCGGCCGA| |CCACGGGGCGCACCTCTCTTTACGCGGTCTCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAGACC
ViMIC ID-