| Basic Information ▶ | |
| VISDB ID | TVIS10017959 |
|---|---|
| Fusion Name | HBV-chrY integration |
| Validated | No |
| Curated Way | VISDB1.0 |
| Method | de novo assembly of RNA-seq reads |
| Wet Assay | No |
| Sample ID | TCGA-BC-A10W |
| Sample Name | TCGA-BC-A10W-01A |
| Sample Type | Tumor |
| Age | 50 |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | Hepatocellular carcinoma |
| Disease Abbreviation | HCC |
| Cancer | Yes |
| Literature ▶ | |
| PubMed ID | 28622513 |
| Journal | Cell |
| Published Year | 2017 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh37/hg19 |
| Human Genome RefSeq Accession | GCF_000001405.13 |
| Human Chromosome | chrY |
| Cytogenetic Band | q11.23 |
| Human Strand | |
| Human Integration Location Type | Intergenic |
| Hg19 Start | 26106593 |
| Hg19 End | 27855825 |
| Hg38 Start | 23960446 |
| Hg38 End | 25709678 |
| Junction Sequence | - |
| Target Gene ▶ | |
| Target Gene | ELOCP10, CDY1B, CDY17P, USP9YP35, CDY18P, GOLGA6L11P, ENSG00000297966, CSPG4P2Y, CSPG4P3Y, GOLGA2P2Y, RN7SL818P, UBE2Q2P4Y, LINC00265-2P, SEPTIN14P22, ENSG00000279274, RBMY2XP, ENSG00000308317, TTTY17B, TRIM60P5Y, ZNF736P12Y, ENSG00000240566, TRIM60P10Y, ZNF736P2Y, TRIM60P11Y, ENSG00000278602, ENSG00000278197, ZNF736P5Y, ZNF736P4Y, ENSG00000274899, RBMY2YP, ENSG00000279115, CICP1, LINC00265-3P, UBE2Q2P5Y, GOLGA2P3Y, RN7SL725P, ENSG00000284380, ENSG00000310249, CSPG4P4Y, CSPG4P1Y, DNM1P48, ENSG00000233619, GOLGA6L16P, CDY19P, USP9YP36, CDY20P, ELOCP34, TRAPPC2P5, TRAPPC2P10, USP9YP31, ENSG00000299288, ENSG00000235981, DNM1P24, ENSG00000230977, ENSG00000296017, ENSG00000284071, GOLGA2P2Y, ENSG00000293927, CICP2, ENSG00000306111, TTTY4B, BPY2B, ZNF736P1Y, TTTY4C, TTTY17C, ENSG00000294545, SEPTIN14P23, ENSG00000307363, ENSG00000235583, ENSG00000304207, USP9YP33, CDY1, OFD1P12Y, DAZ3, DAZ4, BPY2C, ENSG00000306715, OFD1P13Y |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Hepatitis B virus |
| Virus Subtype Name | - |
| Virus Genome Accession | Not given |
| TaxonomyID | 10407 |
| Virus Abbreviation | HBV |
| Virus Genome | - |
| Virus Genome Length | 0 |
| Virus Breakpoint1 | 951 |
| Virus Breakpoint2 | - |
| Virus Gene Name | - |
| Virus Region Type | - |
| Integrated Virus Sequence | - |
| ViMIC ID | - |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D