Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10018038

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10018038
Fusion NameHBV-chr17 integration
ValidatedNo
Curated WayVISDB1.0
Methodde novo assembly of RNA-seq reads
Wet AssayNo
Sample IDTCGA-CC-A7IG
Sample NameTCGA-CC-A7IG-01A
Sample TypeTumor
Age47
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID28622513
JournalCell
Published Year2017
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr17
Cytogenetic Bandp13.1
Human Strand
Human Integration Location TypeIntergenic
Hg19 Start8567142
Hg19 End8567142
Hg38 Start8663824
Hg38 End8663824
Junction Sequence-
Target Gene
Target Gene-
Nearby GeneENSG00000309385
Distance6761
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionNot given
TaxonomyID10407
Virus AbbreviationHBV
Virus Genome-
Virus Genome Length0
Virus Breakpoint11784
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-