Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10018306

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10018306
Fusion NameHBV-chr12 integration
ValidatedNo
Curated WayVISDB1.0
Methodde novo assembly of RNA-seq reads
Wet AssayNo
Sample IDTCGA-DD-A116
Sample NameTCGA-DD-A116-11A
Sample TypeNontumor
Age68
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID28622513
JournalCell
Published Year2017
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr12
Cytogenetic Bandq13.11
Human Strand
Human Integration Location TypeIntronic
Hg19 Start49077286
Hg19 End49077286
Hg38 Start48683503
Hg38 End48683503
Junction Sequence-
Target Gene
Target Gene-
Nearby GeneKANSL2
Distance1265
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionNot given
TaxonomyID10407
Virus AbbreviationHBV
Virus Genome-
Virus Genome Length0
Virus Breakpoint11839
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-