Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10018381

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10018381
Fusion NameHBV-POM121L12 integration
ValidatedNo
Curated WayVISDB1.0
Methodde novo assembly of RNA-seq reads
Wet AssayNo
Sample IDTCGA-G3-A3CH
Sample NameTCGA-G3-A3CH-11A
Sample TypeNontumor
Age53
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID28622513
JournalCell
Published Year2017
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr7
Cytogenetic Bandp12.1
Human Strand
Human Integration Location TypeIntronic
Hg19 Start53106046
Hg19 End53106046
Hg38 Start53038353
Hg38 End53038353
Junction Sequence-
Target Gene
Target Gene-
Nearby GenePOM121L12
Distance1428
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionNot given
TaxonomyID10407
Virus AbbreviationHBV
Virus Genome-
Virus Genome Length0
Virus Breakpoint11852
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-