Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10018382

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10018382
Fusion NameHBV-RYR3 integration
ValidatedNo
Curated WayVISDB1.0
Methodde novo assembly of RNA-seq reads
Wet AssayNo
Sample IDTCGA-G3-A3CH
Sample NameTCGA-G3-A3CH-11A
Sample TypeNontumor
Age53
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID28622513
JournalCell
Published Year2017
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr15
Cytogenetic Bandq13.3
Human Strand
Human Integration Location TypeIntronic
Hg19 Start33668282
Hg19 End33668282
Hg38 Start33376081
Hg38 End33376081
Junction Sequence-
Target Gene
Target GeneRYR3
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionNot given
TaxonomyID10407
Virus AbbreviationHBV
Virus Genome-
Virus Genome Length0
Virus Breakpoint11785
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-