Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10018391

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10018391
Fusion NameHBV-TIMM23B integration
ValidatedNo
Curated WayVISDB1.0
MethodBioinformatic analysis using VirusFinder
Wet AssayNo
Sample IDP105
Sample NameP105A
Sample TypeTumor
Age-
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID29212479
JournalBMC Medicine
Published Year2017
Human Genome
Human Genome Version DescriptionGRCh37.55
Human Genome RefSeq AccessionGCF_000001405.22
Human Chromosomechr10
Cytogenetic Bandq11.22
Human Strand
Human Integration Location TypeIntron7
Hg19 Start51496064
Hg19 End51496064
Hg38 Start46099756
Hg38 End46099756
Junction Sequence-
Target Gene
Target Gene-
Nearby GeneENSG00000305148
Distance2637
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionNC_003977
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus (strain ayw) genome
Virus Genome Length3182
Virus Breakpoint11766
Virus Breakpoint21880
Virus Gene Name-
Virus Region Type-
Integrated Virus SequenceTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTG
ViMIC ID-