Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10018464

Basic Information ▶
VISDB ID	TVIS10018464
Fusion Name	HBV-ALB integration
Validated	No
Curated Way	VISDB1.0
Method	Bioinformatic analysis using VirusFinder
Wet Assay	No
Sample ID	P138
Sample Name	P138D
Sample Type	Nontumor
Age	-
Gender	-
Disease Information ▶
Disease Name	Hepatocellular carcinoma
Disease Abbreviation	HCC
Cancer	Yes
Literature ▶
PubMed ID	29212479
Journal	BMC Medicine
Published Year	2017
Human Genome ▶
Human Genome Version Description	GRCh37.55
Human Genome RefSeq Accession	GCF_000001405.22
Human Chromosome	chr4
Cytogenetic Band	q13.3
Human Strand
Human Integration Location Type	Exon12
Hg19 Start	74283804
Hg19 End	74284027
Hg38 Start	73418087
Hg38 End	73418310
Junction Sequence	CTATCCGTGGTCCTGAACCAGTTATGTGTGTTGCATGAGAAAACGCCAGTAAGTGACAGAGTCACCAAATGCTGCACAGAATCCTTGGTGAACAGGCGACCATGCTTTTCAGCTCTGGAAGTCGATGAAACATACGTTCCCAAAGAGTTTAATGCTGAAACATTCACCTTCCATGCAGATATATGCACACTTTCTGAGAAGGAGAGACAAATCAAGAAACAAA
Target Gene ▶
Target Gene	ALB
Nearby Gene	-
Distance	-
Virus Information ▶
Virus Name	Hepatitis B virus
Virus Subtype Name	-
Virus Genome Accession	NC_003977
TaxonomyID	10407
Virus Abbreviation	HBV
Virus Genome	Hepatitis B virus (strain ayw) genome
Virus Genome Length	3182
Virus Breakpoint1	31
Virus Breakpoint2	1694
Virus Gene Name	-
Virus Region Type	-
Integrated Virus Sequence	ATCCCAGAGTGAGAGGCCTGTATTTCCCTGCTGGTGGCTCCAGTTCAGGAACAGTAAACCCTGTTCTGACTACTGCCTCTCCCTTATCGTCAATCTTCTCGAGGATTGGGGACCCTGCGCTGAACATGGAGAACATCACATCAGGATTCCTAGGACCCCTTCTCGTGTTACAGGCGGGGTTTTTCTTGTTGACAAGAATCCTCACAATACCGCAGAGTCTAGACTCGTGGTGGACTTCTCTCAATTTTCTAGGGG
ViMIC ID	-