| Basic Information ▶ | |
| VISDB ID | TVIS10018476 |
|---|---|
| Fusion Name | HBV-chr17 integration |
| Validated | No |
| Curated Way | VISDB1.0 |
| Method | Bioinformatic analysis using VirusFinder |
| Wet Assay | No |
| Sample ID | P140 |
| Sample Name | P140D |
| Sample Type | Nontumor |
| Age | - |
| Gender | - |
| Disease Information ▶ | |
| Disease Name | Hepatocellular carcinoma |
| Disease Abbreviation | HCC |
| Cancer | Yes |
| Literature ▶ | |
| PubMed ID | 29212479 |
| Journal | BMC Medicine |
| Published Year | 2017 |
| Human Genome ▶ | |
| Human Genome Version Description | GRCh37.55 |
| Human Genome RefSeq Accession | GCF_000001405.22 |
| Human Chromosome | chr17 |
| Cytogenetic Band | q24.3 |
| Human Strand | |
| Human Integration Location Type | - |
| Hg19 Start | 69633498 |
| Hg19 End | 69633504 |
| Hg38 Start | 71637357 |
| Hg38 End | 71637363 |
| Junction Sequence | GCTTTG |
| Target Gene ▶ | |
| Target Gene | - |
| Nearby Gene | - |
| Distance | - |
| Virus Information ▶ | |
| Virus Name | Hepatitis B virus |
| Virus Subtype Name | - |
| Virus Genome Accession | NC_003977 |
| TaxonomyID | 10407 |
| Virus Abbreviation | HBV |
| Virus Genome | Hepatitis B virus (strain ayw) genome |
| Virus Genome Length | 3182 |
| Virus Breakpoint1 | 1803 |
| Virus Breakpoint2 | - |
| Virus Gene Name | - |
| Virus Region Type | - |
| Integrated Virus Sequence | CATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTG| |CGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCA |
| ViMIC ID | - |
| Predicted VIS Effect ▶ | |
| Region | intergenic |
| Impact | NA |
| AlphaGenome Analysis | |
| Window | chr17:71571821-71702893 |
| RNA-seq Change (±2kb) | Mean: -7.700955029577017e-05 | Peak: 0.0059051513671875 |
| ATAC Change (±2kb) | Mean: -0.0001752582029439509 | Peak: 4.6884765625 |
| Interpretation | RNA-seq: no signal in region (REF≈0, ALT≈0) | Splice sites: no signal in region (REF≈0, ALT≈0) | ATAC: minimal change -0.8% |
| Visualization | |
Center for Precision Health
McWilliams School of Biomedical Informatics at UTHealth Houston
7000 Fannin Street, Suite 600, Houston, TX 77030
Email: Zhongming Zhao, Ph.D