Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10018502

Basic Information ▶
VISDB ID	TVIS10018502
Fusion Name	HBV-DLG2 integration
Validated	No
Curated Way	VISDB1.0
Method	Bioinformatic analysis using VirusFinder
Wet Assay	No
Sample ID	P157
Sample Name	P157A
Sample Type	Tumor
Age	-
Gender	-
Disease Information ▶
Disease Name	Hepatocellular carcinoma
Disease Abbreviation	HCC
Cancer	Yes
Literature ▶
PubMed ID	29212479
Journal	BMC Medicine
Published Year	2017
Human Genome ▶
Human Genome Version Description	GRCh37.55
Human Genome RefSeq Accession	GCF_000001405.22
Human Chromosome	chr11
Cytogenetic Band	q14.1
Human Strand
Human Integration Location Type	Intron25
Hg19 Start	85195010
Hg19 End	85195230
Hg38 Start	85483966
Hg38 End	85484186
Junction Sequence	Ggcccgggtcttccaggagtcgggttgcttgggaatgcagcccaaagcgggtggtaaactccatttaaggctaaataccggcacgagaccgatagtcaacaagtaccgtaagggaaagttgaaaagaactttgaagagagagtacaagagggcgtgaaaccgttaagaggtaaatgggtcaggtccgcgcagtccgcccggaggattcaacccggtggcg
Target Gene ▶
Target Gene	DLG2
Nearby Gene	-
Distance	-
Virus Information ▶
Virus Name	Hepatitis B virus
Virus Subtype Name	-
Virus Genome Accession	NC_003977
TaxonomyID	10407
Virus Abbreviation	HBV
Virus Genome	Hepatitis B virus (strain ayw) genome
Virus Genome Length	3182
Virus Breakpoint1	635
Virus Breakpoint2	1739
Virus Gene Name	-
Virus Region Type	-
Integrated Virus Sequence	ATTCCTATGGGAGTGGGCCTCAGCCCGTTTCTCCTGGCTCAGTTTACTAGTGCCATTTGTTCAGTGGTTCGTAGGGCTTTCCCCCACTGTTTGGCTTTCAGTTATATGGATGATGTGGTATTGGGGGCCAAGTCTGTACAGCATCTTGAGTCCCTTTTTACCGCTGTTACCAATTTTCTTTTGTCTTTGGGTATACATTTAAACCCTAACAAAACAAAGAGATGGGGTTACTCTCTAAATTTTATGGGTTATGTC
ViMIC ID	-