Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10018509

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10018509
Fusion NameHBV-CALR integration
ValidatedNo
Curated WayVISDB1.0
MethodBioinformatic analysis using VirusFinder
Wet AssayNo
Sample IDP157
Sample NameP157A
Sample TypeTumor
Age-
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID29212479
JournalBMC Medicine
Published Year2017
Human Genome
Human Genome Version DescriptionGRCh37.55
Human Genome RefSeq AccessionGCF_000001405.22
Human Chromosomechr19
Cytogenetic Bandp13.13
Human Strand
Human Integration Location TypeExon8
Hg19 Start13054347
Hg19 End13054443
Hg38 Start12943533
Hg38 End12943629
Junction SequenceCAGGTCAAGTCTGGCACCATCTTTGACAACTTCCTCATCACCAACGATGAGGCATACGCTGAGGAGTTTGGCAACGAGACGTGGGGCGTAACAAAG
Target Gene
Target GeneCALR
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionNC_003977
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus (strain ayw) genome
Virus Genome Length3182
Virus Breakpoint1480
Virus Breakpoint2639
Virus Gene Name-
Virus Region Type-
Integrated Virus SequenceCTAATTCCAGGATCCTCAACAACCAGCACGGGACCATGCCGGACCTGCATGACTACTGCTCAAGGAACCTCTATGTATCCCTCCTGTTGCTGTACCAAACCTTCGGACGGAAATTGCACCTGTATTCCCATCCCATCATCCTGGGCTTTCGGAAAATTCC
ViMIC ID-