Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10018560

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10018560
Fusion NameHBV-HOPX integration
ValidatedNo
Curated WayVISDB1.0
MethodBioinformatic analysis using VirusFinder
Wet AssayNo
Sample IDP16
Sample NameP16A
Sample TypeTumor
Age-
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID29212479
JournalBMC Medicine
Published Year2017
Human Genome
Human Genome Version DescriptionGRCh37.55
Human Genome RefSeq AccessionGCF_000001405.22
Human Chromosomechr4
Cytogenetic Bandq12
Human Strand
Human Integration Location TypeIntron3
Hg19 Start57547156
Hg19 End57547427
Hg38 Start56680990
Hg38 End56681261
Junction SequenceCCTGCTTGGCCAAAAGACCAACACCAACTCCCCTTCCTCCAAATTCCCCTCGACCCCATGCAGTTTTGTTTGTAAGGGACTGATGTCTTACACCCAGCAGCATTTCCTAGCTTCTGCTTGGGGGTAAGCTTGTCATTCCTATTCTCCCTTTCACCTCTACCGTTTTCCAACAGATGAGCAAATACGGTAACGATAGCATTTTGGTCTAGTTCCTGCACAAACTCATTCCTCTGCATAAAAGGCAGACCTTTGAAA
Target Gene
Target GeneHOPX
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionNC_003977
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus (strain ayw) genome
Virus Genome Length3182
Virus Breakpoint1485
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus SequenceTGCGGCGTTTTATCATCTTCCTCTTCATCCTGCTGCTATGCCTCATCTTCTTGTTGGTTCTTCTGGACTATCAAGGTATGTTGCCCGTTTGTCCTCTAAT| |TCCAGGATCCTCAACAACCAGCACGGGACCATGCCGGACCTGCATGACTACTGCTCAAGGAACCTCTATGTATCCCTCCTGTTGCTGTACCAAACCTTCG
ViMIC ID-