Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10018829

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10018829
Fusion NameHBV-chr20 integration
ValidatedNo
Curated WayVISDB1.0
MethodBioinformatic analysis using VirusFinder
Wet AssayNo
Sample IDP75
Sample NameP75D
Sample TypeNontumor
Age-
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID29212479
JournalBMC Medicine
Published Year2017
Human Genome
Human Genome Version DescriptionGRCh37.55
Human Genome RefSeq AccessionGCF_000001405.22
Human Chromosomechr20
Cytogenetic Bandp11.23
Human Strand
Human Integration Location Type-
Hg19 Start20369812
Hg19 End20369812
Hg38 Start20389168
Hg38 End20389168
Junction Sequence-
Target Gene
Target GeneENSG00000300082
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionNC_003977
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus (strain ayw) genome
Virus Genome Length3182
Virus Breakpoint11809
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus SequenceTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACC| |AGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACA
ViMIC ID-