Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10018877

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10018877
Fusion NameHBV-chr2 integration
ValidatedNo
Curated WayVISDB1.0
MethodBioinformatic analysis using VirusFinder
Wet AssayNo
Sample IDP99
Sample NameP99D
Sample TypeNontumor
Age-
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID29212479
JournalBMC Medicine
Published Year2017
Human Genome
Human Genome Version DescriptionGRCh37.55
Human Genome RefSeq AccessionGCF_000001405.22
Human Chromosomechr2
Cytogenetic Bandq22.1
Human Strand
Human Integration Location Type-
Hg19 Start139613521
Hg19 End139613521
Hg38 Start138855951
Hg38 End138855951
Junction Sequence-
Target Gene
Target Gene-
Nearby GeneRN7SKP286
Distance7646
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionNC_003977
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus (strain ayw) genome
Virus Genome Length3182
Virus Breakpoint11804
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus SequenceATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGC| |GCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCAT
ViMIC ID-