Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10019073

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10019073
Fusion NameHBV-DISP1 integration
ValidatedNo
Curated WayVISDB1.0
MethodBioinformatic analysis using VirusFinder
Wet AssayNo
Sample ID70
Sample Name70N
Sample TypeNontumor
Age-
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID22634754
JournalNature GeNetics
Published Year2012
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr1
Cytogenetic Bandq41
Human Strand
Human Integration Location TypeIntron2
Hg19 Start223100347
Hg19 End223100436
Hg38 Start222927005
Hg38 End222927094
Junction Sequencegcaaatacagaatccacaaataatgaggatcaactgtactgggagtgtagttgctgggtcatatggtagttctatgttcaatattttga
Target Gene
Target GeneDISP1
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionNC_003977
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus (strain ayw) genome
Virus Genome Length3182
Virus Breakpoint1-
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-