Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10019073

Genomic Region Visualization (IGV)

Basic Information ▶
VISDB IDTVIS10019073
Fusion NameHBV-DISP1 integration
ValidatedNo
Curated WayVISDB1.0
MethodBioinformatic analysis using VirusFinder
Wet AssayNo
Sample ID70
Sample Name70N
Sample TypeNontumor
Age-
Gender-
Disease Information ▶
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature ▶
PubMed ID22634754
JournalNature GeNetics
Published Year2012
Human Genome ▶
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr1
Cytogenetic Bandq41
Human Strand
Human Integration Location TypeIntron2
Hg19 Start223100347
Hg19 End223100436
Hg38 Start222927005
Hg38 End222927094
Junction Sequencegcaaatacagaatccacaaataatgaggatcaactgtactgggagtgtagttgctgggtcatatggtagttctatgttcaatattttga
Target Gene ▶
Target GeneDISP1
Nearby Gene-
Distance-
Virus Information ▶
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionNC_003977
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus (strain ayw) genome
Virus Genome Length3182
Virus Breakpoint1-
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-
Predicted VIS Effect ▶
Gene IdENSG00000154309.10
Gene NameDISP1
TranscriptTranscript 1: ENST00000900733.1, Transcript 2: ENST00000900734.1, Transcript 3: ENST00000900736.1, Transcript 4: ENST00000674736.1, Transcript 5: ENST00000900737.1, Transcript 6: ENST00000940100.1, Transcript 7: ENST00000900738.1, Transcript 8: ENST00000675850.1, Transcript 9: ENST00000674709.1, Transcript 10: ENST00000940101.1, Transcript 11: ENST00000676139.1, Transcript 12: ENST00000953645.1, Transcript 13: ENST00000953647.1, Transcript 14: ENST00000900740.1, Transcript 15: ENST00000900741.1, Transcript 16: ENST00000900739.1, Transcript 17: ENST00000953646.1, Transcript 18: ENST00000495684.2, Transcript 19: ENST00000940102.1, Transcript 20: ENST00000675039.1, Transcript 21: ENST00000900735.1, Transcript 22: ENST00000940103.1, Transcript 23: ENST00000900742.1, Transcript 24: ENST00000900743.1, Transcript 25: ENST00000676303.1, Transcript 26: ENST00000675961.1, Transcript 27: ENST00000900744.1, Transcript 28: ENST00000360254.3, Transcript 29: ENST00000900745.1, Transcript 30: ENST00000284476.7, Transcript 31: ENST00000900746.1, Transcript 32: ENST00000482856.1, Transcript 33: ENST00000900747.1
Transcript 1 Regionintron
Transcript 1 Impactintronic_insertion
Transcript 2 Regionintron
Transcript 2 Impactintronic_insertion
Transcript 3 Regionintron
Transcript 3 Impactintronic_insertion
Transcript 4 Regionintron
Transcript 4 Impactintronic_insertion
Transcript 5 Regionintron
Transcript 5 Impactintronic_insertion
Transcript 6 Regionintron
Transcript 6 Impactintronic_insertion
Transcript 7 Regionintron
Transcript 7 Impactintronic_insertion
Transcript 8 Regionintron
Transcript 8 Impactintronic_insertion
Transcript 9 Regionintron
Transcript 9 Impactintronic_insertion
Transcript 10 Regionintron
Transcript 10 Impactintronic_insertion
Transcript 11 Regionintron
Transcript 11 Impactintronic_insertion
Transcript 12 Regionintron
Transcript 12 Impactintronic_insertion
Transcript 13 Regionintron
Transcript 13 Impactintronic_insertion
Transcript 14 Regionintron
Transcript 14 Impactintronic_insertion
Transcript 15 Regionintron
Transcript 15 Impactintronic_insertion
Transcript 16 Regionintron
Transcript 16 Impactintronic_insertion
Transcript 17 Regionintron
Transcript 17 Impactintronic_insertion
Transcript 18 Regionintron
Transcript 18 Impactintronic_insertion
Transcript 19 Regionintron
Transcript 19 Impactintronic_insertion
Transcript 20 Regionintron
Transcript 20 Impactintronic_insertion
Transcript 21 Regionintron
Transcript 21 Impactintronic_insertion
Transcript 22 Regionintron
Transcript 22 Impactintronic_insertion
Transcript 23 Regionintron
Transcript 23 Impactintronic_insertion
Transcript 24 Regionintron
Transcript 24 Impactintronic_insertion
Transcript 25 Regionintron
Transcript 25 Impactintronic_insertion
Transcript 26 Regionintron
Transcript 26 Impactintronic_insertion
Transcript 27 Regionintron
Transcript 27 Impactintronic_insertion
Transcript 28 Regionintron
Transcript 28 Impactintronic_insertion
Transcript 29 Regionintron
Transcript 29 Impactintronic_insertion
Transcript 30 Regionpromoter
Transcript 30 Impactpromoter_insertion
Transcript 31 Regionpromoter
Transcript 31 Impactpromoter_insertion
Transcript 32 Regionpromoter
Transcript 32 Impactpromoter_insertion
Transcript 33 Regionpromoter
Transcript 33 Impactpromoter_insertion
AlphaGenome Analysis
Windowchr1:222861469-222992541
RNA-seq Change (±2kb)Mean: -0.00023908790899440646 | Peak: 0.8275680541992188
ATAC Change (±2kb)Mean: -0.002870997879654169 | Peak: 11.997909545898438
InterpretationRNA-seq: no signal in region (REF≈0, ALT≈0) | Splice sites: no signal in region (REF≈0, ALT≈0) | ATAC: minimal change -6.3%
Visualization
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