Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10019133

Basic Information ▶
VISDB ID	TVIS10019133
Fusion Name	HBV-chr18 integration
Validated	No
Curated Way	VISDB1.0
Method	Bioinformatic analysis using VirusFinder
Wet Assay	No
Sample ID	70
Sample Name	70N
Sample Type	Nontumor
Age	-
Gender	-
Disease Information ▶
Disease Name	Hepatocellular carcinoma
Disease Abbreviation	HCC
Cancer	Yes
Literature ▶
PubMed ID	22634754
Journal	Nature GeNetics
Published Year	2012
Human Genome ▶
Human Genome Version Description	GRCh37/hg19
Human Genome RefSeq Accession	GCF_000001405.13
Human Chromosome	chr18
Cytogenetic Band	q23
Human Strand
Human Integration Location Type	-
Hg19 Start	78016213
Hg19 End	78016302
Hg38 Start	80258330
Hg38 End	80258419
Junction Sequence	gtgagggtgagggttagggttagggtgagggtgagggtgagggtgagggtgagggtgagggtgagggttagggtgttagagggttaggg
Target Gene ▶
Target Gene	-
Nearby Gene	-
Distance	-
Virus Information ▶
Virus Name	Hepatitis B virus
Virus Subtype Name	-
Virus Genome Accession	NC_003977
TaxonomyID	10407
Virus Abbreviation	HBV
Virus Genome	Hepatitis B virus (strain ayw) genome
Virus Genome Length	3182
Virus Breakpoint1	-
Virus Breakpoint2	-
Virus Gene Name	-
Virus Region Type	-
Integrated Virus Sequence	-
ViMIC ID	-
Predicted VIS Effect ▶
Region	intergenic
Impact	NA

AlphaGenome Analysis
Window	chr18:80192794-80323866
RNA-seq Change (±2kb)	Mean: -7.448415090038907e-06 \| Peak: 0.1383380889892578
ATAC Change (±2kb)	Mean: 5.638467337121256e-05 \| Peak: 0.8759765625
Interpretation	RNA-seq: no signal in region (REF≈0, ALT≈0) \| Splice sites: no signal in region (REF≈0, ALT≈0) \| ATAC: minimal change 0.1%
Visualization