Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10019345

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10019345
Fusion NameHBV-ADIPOR2 integration
ValidatedNo
Curated WayVISDB1.0
MethodBioinformatic analysis using VirusFinder
Wet AssayNo
Sample ID180
Sample Name180N
Sample TypeNontumor
Age-
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID22634754
JournalNature GeNetics
Published Year2012
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr12
Cytogenetic Bandp13.33
Human Strand
Human Integration Location TypeIntron1
Hg19 Start1813983
Hg19 End1813985
Hg38 Start1704817
Hg38 End1704819
Junction SequenceCT
Target Gene
Target GeneADIPOR2
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionNC_003977
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus (strain ayw) genome
Virus Genome Length3182
Virus Breakpoint1-
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-