Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10019361

Basic Information ▶
VISDB ID	TVIS10019361
Fusion Name	HBV-chr14 integration
Validated	No
Curated Way	VISDB1.0
Method	Bioinformatic analysis using VirusFinder
Wet Assay	No
Sample ID	180
Sample Name	180N
Sample Type	Nontumor
Age	-
Gender	-
Disease Information ▶
Disease Name	Hepatocellular carcinoma
Disease Abbreviation	HCC
Cancer	Yes
Literature ▶
PubMed ID	22634754
Journal	Nature GeNetics
Published Year	2012
Human Genome ▶
Human Genome Version Description	GRCh37/hg19
Human Genome RefSeq Accession	GCF_000001405.13
Human Chromosome	chr14
Cytogenetic Band	q21.2
Human Strand
Human Integration Location Type	-
Hg19 Start	47023334
Hg19 End	47023423
Hg38 Start	46554131
Hg38 End	46554220
Junction Sequence	gtgagatggtatctcattgtggttttgatttgaatttctctgatgtttagtaatgttcagcattttgtaatatgcttgttggctgcttg
Target Gene ▶
Target Gene	-
Nearby Gene	-
Distance	-
Virus Information ▶
Virus Name	Hepatitis B virus
Virus Subtype Name	-
Virus Genome Accession	NC_003977
TaxonomyID	10407
Virus Abbreviation	HBV
Virus Genome	Hepatitis B virus (strain ayw) genome
Virus Genome Length	3182
Virus Breakpoint1	-
Virus Breakpoint2	-
Virus Gene Name	-
Virus Region Type	-
Integrated Virus Sequence	-
ViMIC ID	-
Predicted VIS Effect ▶
Region	intergenic
Impact	NA

AlphaGenome Analysis
Window	chr14:46488595-46619667
RNA-seq Change (±2kb)	Mean: 1.040861116052838e-05 \| Peak: 0.0125885009765625
ATAC Change (±2kb)	Mean: 0.000696726085152477 \| Peak: 4.23828125
Interpretation	RNA-seq: no signal in region (REF≈0, ALT≈0) \| Splice sites: no signal in region (REF≈0, ALT≈0) \| ATAC: minimal change 2.9%
Visualization