Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10019362

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10019362
Fusion NameHBV-RAD51B integration
ValidatedNo
Curated WayVISDB1.0
MethodBioinformatic analysis using VirusFinder
Wet AssayNo
Sample ID180
Sample Name180N
Sample TypeNontumor
Age-
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID22634754
JournalNature GeNetics
Published Year2012
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr14
Cytogenetic Bandq24.1
Human Strand
Human Integration Location TypeIntron7
Hg19 Start68422612
Hg19 End68422612
Hg38 Start67955895
Hg38 End67955895
Junction Sequence-
Target Gene
Target GeneRAD51B
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionNC_003977
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus (strain ayw) genome
Virus Genome Length3182
Virus Breakpoint1-
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus Sequence-
ViMIC ID-