Basic Information ▼ | |
VISDB ID | TVIS10019678 |
---|---|
Fusion Name | HBV-chr20 integration |
Validated | No |
Curated Way | VISDB1.0 |
Method | Bioinformatic analysis using VirusFinder |
Wet Assay | No |
Sample ID | TCGA-DD-A116 |
Sample Name | TCGA-DD-A116-11A |
Sample Type | Nontumor |
Age | 68 |
Gender | - |
Disease Information ▼ | |
Disease Name | Hepatocellular carcinoma |
Disease Abbreviation | HCC |
Cancer | Yes |
Literature ▼ | |
PubMed ID | 28622513 |
Journal | Cell |
Published Year | 2017 |
Human Genome ▼ | |
Human Genome Version Description | GRCh37/hg19 |
Human Genome RefSeq Accession | GCF_000001405.13 |
Human Chromosome | chr20 |
Cytogenetic Band | q11.22 |
Human Strand | |
Human Integration Location Type | - |
Hg19 Start | 33882423 |
Hg19 End | 33882423 |
Hg38 Start | 35294620 |
Hg38 End | 35294620 |
Junction Sequence | - |
Target Gene ▼ | |
Target Gene | - |
Nearby Gene | FAM83C |
Distance | 2195 |
Virus Information ▼ | |
Virus Name | Hepatitis B virus |
Virus Subtype Name | - |
Virus Genome Accession | NC_003977 |
TaxonomyID | 10407 |
Virus Abbreviation | HBV |
Virus Genome | Hepatitis B virus (strain ayw) genome |
Virus Genome Length | 3182 |
Virus Breakpoint1 | 1720 |
Virus Breakpoint2 | - |
Virus Gene Name | - |
Virus Region Type | - |
Integrated Virus Sequence | CGTGAACGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGT| |TTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCA |
ViMIC ID | - |