Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10019683

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10019683
Fusion NameHBV-SLCO1B1 integration
ValidatedNo
Curated WayVISDB1.0
MethodBioinformatic analysis using VirusFinder
Wet AssayNo
Sample IDTCGA-DD-A119
Sample NameTCGA-DD-A119-11A
Sample TypeNontumor
Age40
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID28622513
JournalCell
Published Year2017
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr12
Cytogenetic Bandp12.1
Human Strand
Human Integration Location TypeIntron14
Hg19 Start21379955
Hg19 End21379955
Hg38 Start21227021
Hg38 End21227021
Junction Sequence-
Target Gene
Target GeneSLCO1B1
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionNC_003977
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus (strain ayw) genome
Virus Genome Length3182
Virus Breakpoint11804
Virus Breakpoint2-
Virus Gene Name-
Virus Region Type-
Integrated Virus SequenceATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGC| |GCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCAT
ViMIC ID-