Virus Integration Site Database Data Release 2.0

Details for VISDB ID: TVIS10019687

Genomic Region Visualization (IGV)

Basic Information
VISDB IDTVIS10019687
Fusion NameHBV-PDXDC2P integration
ValidatedNo
Curated WayVISDB1.0
MethodBioinformatic analysis using VirusFinder
Wet AssayNo
Sample IDTCGA-DD-A119
Sample NameTCGA-DD-A119-11A
Sample TypeNontumor
Age40
Gender-
Disease Information
Disease NameHepatocellular carcinoma
Disease AbbreviationHCC
CancerYes
Literature
PubMed ID28622513
JournalCell
Published Year2017
Human Genome
Human Genome Version DescriptionGRCh37/hg19
Human Genome RefSeq AccessionGCF_000001405.13
Human Chromosomechr16
Cytogenetic Bandq22.1
Human Strand
Human Integration Location TypeIntron22
Hg19 Start70072015
Hg19 End70072015
Hg38 Start70038112
Hg38 End70038112
Junction Sequence-
Target Gene
Target GenePDXDC2P, PDXDC2P-NPIPB14P
Nearby Gene-
Distance-
Virus Information
Virus NameHepatitis B virus
Virus Subtype Name-
Virus Genome AccessionNC_003977
TaxonomyID10407
Virus AbbreviationHBV
Virus GenomeHepatitis B virus (strain ayw) genome
Virus Genome Length3182
Virus Breakpoint11584
Virus Breakpoint21733
Virus Gene Name-
Virus Region Type-
Integrated Virus SequenceACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTG
ViMIC ID-